This book constitutes the refereed proceedings of three workshops held at the 18th Asia-Pacific Web Conference, APWeb 2016, in Suzhou, China, in September 2016: the Second International Workshop on Web Data Mining and Applications, WDMA 2016, the First International Workshop on Graph Analytics and Query Processing, GAP 2016, and the First International Workshop on Spatial-temporal Data Management and Analytics, SDMA 2016.The 27 full papers included in this book were carefully reviewed and selected from 37 submissions. The goal of these workshops is to promote the new research directions and applications, especially on web data, graph data, and spatial-temporal data management and analytics.